Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNISVNPYLMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAKIKTDNTQSVEIGHQI----ETLLKEAAEKRREMLAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQILKEQLQAQMTVFEDELNKRVAMGLGS
3FFZ Chain:A ((640-757))
------------------LLIPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKTIIESKYNSYTLEEKNELTNKYDIKQI------------ENELNQKVSIAMNN
General information:
TITO was launched using:
RESULT:
Template:
3FFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7366 for 526 contacts (14.0/contact) +
2D Compatibility (PS) -12186 + (NN) -3541 + (LL) 3728
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -11633.0 ( -22.12 by residue)
QMean score : 0.328
(partial model without unconserved sides chains):
PDB file :
Tito_3FFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FFZ-query.scw
PDB file :
Tito_Scwrl_3FFZ.pdb
: