Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVIRLTRIGRKKKPFYRVVVTDSRKRRDGGWIESIGYYNPLSEPKD--VRIDKERLNYWKGVGAKMSERVEKLSQKA
2YKR Chain:P ((1-74))
MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEV
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23169 for 472 contacts (-49.1/contact) +
2D Compatibility (PS) -7457 + (NN) -3387 + (LL) 0
1D Compatibility (HY) -6000 + (ID) 1800
Total energy: -41813.0 ( -88.59 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: