Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNLKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
4YHA Chain:A ((8-234))
--------------------TKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKK--FKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
General information:
TITO was launched using:
RESULT:
Template:
4YHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103861 for 1796 contacts (-57.8/contact) +
2D Compatibility (PS) -24112 + (NN) -11438 + (LL) 2124
1D Compatibility (HY) -27600 + (ID) 11200
Total energy: -176087.0 ( -98.04 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4YHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHA-query.scw
PDB file :
Tito_Scwrl_4YHA.pdb
: