Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDE--HDNIFVDDKPTNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ
1XOE Chain:A ((265-329))
-------NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTDWSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIEYF
General information:
TITO was launched using:
RESULT:
Template:
1XOE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12082 for 343 contacts (-35.2/contact) +
2D Compatibility (PS) -6445 + (NN) 2420 + (LL) 624
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -18333.0 ( -53.45 by residue)
QMean score : 0.131
(partial model without unconserved sides chains):
PDB file :
Tito_1XOE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XOE-query.scw
PDB file :
Tito_Scwrl_1XOE.pdb
: