Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLETSSHFLKSFRLKRYIGFLLISLALLITPFVRIDGAHLFLISFEHKQLHFLGKIFSAEELQILPFMVILLFIGIFFITTSLGRVWCGWACPQTFLRVLYRDVIETKIFKLHKKISNKQESPKNTPSYKIRKALSVLLFAPVVAGLMMLFFFYFIAPEDFFMYLKNPSDHPIAMGFWLFSALV-VLFDIVVVAERFCIYLCPYARVQSVLYDNDTLNPIYDEKRGGVLYDNQGRLFPLPPKKRSAENE--CVNCLHCVQVCP-THIDIRKGLQLECINCLECVDACTITMAKYNRPSLIQWSSTNAINTRQKVRLVRLKTIAYMGVIAVVVALLIITSFKKERMLLDINRNSDLYEIRSSGYVDNDYVFLFHNTDNKDHEFYFKILGQKDIQIKKPLNPIAIKAGQKIKAVVILRKPLKGNATEYKHAKDALIPITIQAYSVDDKNITIERESVFIVPSED |
| 2VKR Chain:A ((24-101)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------PVDPPKVLG--IHGTIVGVDFDLCI-ADGSCITACPVNVFQ--------------------WYDTPGH--PASEKKADPINEQACIFCMACVNVCPVAAIDVKPP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VKR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50994 for 538 contacts (-94.8/contact) +
2D Compatibility (PS) -7230 + (NN) -2355 + (LL) 32188
1D Compatibility (HY) -7600 + (ID) 1550
Total energy: -37541.0 ( -69.78 by residue)
QMean score : 0.078
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