Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILKEVCIENTTNLVNVIEAGANRVELCDNLAEGGTSVSYGVAKHVVKICHEQNVSVMAMVRPRKGNFVYTKEEISVMIDDILMYKKIAVDGVVFGCITDSGLLDKPAINELLKAAAGLEVTFHMAFDELVETEKLSAIDWLVEQGVTRILTHGGDGAKLPEETFVQWRKYIDYAAGRIIILPGGGIKSHNLEWIIKETGAAEIHGTDLFGER
3IWP Chain:A ((26-222))
-FLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQ-VVK--QSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMV--HDPMAALETLLTLGFERVLTSGCDSSAL--EGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFH--------
General information:
TITO was launched using:
RESULT:
Template:
3IWP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150586 for 1656 contacts (-90.9/contact) +
2D Compatibility (PS) -21604 + (NN) -11026 + (LL) 916
1D Compatibility (HY) -18800 + (ID) 4150
Total energy: -205250.0 ( -123.94 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3IWP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IWP-query.scw
PDB file :
Tito_Scwrl_3IWP.pdb
: