Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE |
2RDD Chain:B ((25-30)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKRTKE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RDD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1947 for 14 contacts (139.1/contact) +
2D Compatibility (PS) -616 + (NN) -153 + (LL) 17976
1D Compatibility (HY) 400 + (ID) 100
Total energy: 19454.0 ( 1389.57 by residue)
QMean score : 0.418
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