Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEINDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIKEEA
2J5A Chain:A ((8-99))
--RYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKIDEDVIRWLNIQ---
General information:
TITO was launched using:
RESULT:
Template:
2J5A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41904 for 631 contacts (-66.4/contact) +
2D Compatibility (PS) -9602 + (NN) -2212 + (LL) 704
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -62064.0 ( -98.36 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_2J5A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J5A-query.scw
PDB file :
Tito_Scwrl_2J5A.pdb
: