Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEKTKVCVTDWFYGSQEAVLENSNDVVVRINRKALLLNYSMFPFLFYGFVMTSLFATLIALGLCLVSFFYSRKHWFEFVKIK
3LPP Chain:A ((634-697))
-----------------------------------------------------YEHQDPAFFGQNSLLVKSSRQYLTIRYTLLPFLYTLFYKAHVFGETVARPV-LHEFYEDTNSWIE-----
General information:
TITO was launched using:
RESULT:
Template:
3LPP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14209 for 293 contacts (-48.5/contact) +
2D Compatibility (PS) -6151 + (NN) 1252 + (LL) 4720
1D Compatibility (HY) -6000 + (ID) 850
Total energy: -21238.0 ( -72.48 by residue)
QMean score : -0.202
(partial model without unconserved sides chains):
PDB file :
Tito_3LPP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LPP-query.scw
PDB file :
Tito_Scwrl_3LPP.pdb
: