Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVLVLPENKDINYIKTVQEVKRFFADFERFRMITGLSKKPHLLRNGFLEEPQFEPVAFSAR---HNKEVILEARWLVEKY-TEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGILVRK
2PP1 Chain:A ((73-156))
-----------------------------------------------------FEGVGFSYSKRAGGQGIYAHAKEIADNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLG-----
General information:
TITO was launched using:
RESULT:
Template:
2PP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12563 for 514 contacts (-24.4/contact) +
2D Compatibility (PS) -8313 + (NN) 587 + (LL) 5048
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -20041.0 ( -38.99 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_2PP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PP1-query.scw
PDB file :
Tito_Scwrl_2PP1.pdb
: