Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDISSTEIWDAIRRNSYLLYYQPKVDAKTNKIIGFEGLVRLKTAT-TILAPIDFFDDIVLLNATREMQDFVAETAIKQINQLGGR----FSISINIPAHYVASSTYMTFLHDYVKEHLKYPECLEIEIIERGEITELAIADKNLRKIKDLGVKVSMDDFGKGYSSLAYLRSLPIDIVKTDMSFIALLKTDRKQQIIIRAIVNLCHDLGGKVVTEGVEDMEQVEKLREMKVDYFQGYYFSRPLPMEEIKQKYSIV
4RNI Chain:A ((41-282))
----------ALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRRGLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVPKVSVNLSARQFADGQLGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSSLNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFLREHGCDEVQGYLFGRPMPAEQFGMLYA--
General information:
TITO was launched using:
RESULT:
Template:
4RNI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113487 for 1863 contacts (-60.9/contact) +
2D Compatibility (PS) -25518 + (NN) -8194 + (LL) 1116
1D Compatibility (HY) -19600 + (ID) 3800
Total energy: -169483.0 ( -90.97 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_4RNI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RNI-query.scw
PDB file :
Tito_Scwrl_4RNI.pdb
: