Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKNYYTGFEGYPEIDFYTYINGEKTGIEMWEGYFDNIMNEFSPVDGRWVSLAYYYHLYEGWYDESPWVIPDNKKALEQFGTIDIKVLDNVTQEIMMKLIKL---LKDNLDSEIFIEYS
2VFH Chain:A ((94-163))
----------------------------------------------GHWERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILV---
General information:
TITO was launched using:
RESULT:
Template:
2VFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10572 for 392 contacts (-27.0/contact) +
2D Compatibility (PS) -6743 + (NN) 3005 + (LL) 2404
1D Compatibility (HY) 400 + (ID) 950
Total energy: -12456.0 ( -31.78 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_2VFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VFH-query.scw
PDB file :
Tito_Scwrl_2VFH.pdb
: