Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LIMNANLEVNAELVKESYVYLLSRYLVLRQENFDTKEDKIPYNTLKHNSVSPADANFVNPNFDVVYSEAWIAVDDEHAVVLEVPEIKNRYYTVQLLDGWGEVVTNINERNFPEHPHGKFAFVKKGTNPSIPSDAIKIELPSEKVKVLLRVEQKDDPEGAVKLQKAFKFDAPDNIKIKEPLEIPHFTNAEFLLEEIYSNLEELLATYPDKMPKAAEFQDKARKVAAYIELGDDQKAEVRNLIVKEALPYFTNGAKGFGTQKGGWSVTYVAGAFENDILARAIINYGGIWANSIQEALYFIGQKGTDDELLTGDKIYKIHFSADELPAELANAFWSVTLYSVPDYHVIPNELNKFCINNYTGPKLSEDGSLTLYIASEKPADVDPGNWLPSKAGKEFSLNFRLYVPKKEVLEGKVFLPPLEVF |
3VB9 Chain:A ((363-471)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLVTYQDSDGNWLSGEHTYKLHVPAN-VPA---SNFWSTTVYDENNRLMIINDAGSPDISSRKNLKVNSDGSIDVYYGP-KPVKGYENNWVQTNPGEGWFTYFRFYGPTEKMFD----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VB9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45628 for 720 contacts (-63.4/contact) +
2D Compatibility (PS) -11934 + (NN) -7891 + (LL) 21824
1D Compatibility (HY) -7200 + (ID) 1600
Total energy: -52429.0 ( -72.82 by residue)
QMean score : 0.371
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