Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
1OMI Chain:A ((16-248))
----GSEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQEL---------SAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
General information:
TITO was launched using:
RESULT:
Template:
1OMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139440 for 1684 contacts (-82.8/contact) +
2D Compatibility (PS) -24015 + (NN) -6571 + (LL) 448
1D Compatibility (HY) -38000 + (ID) 11100
Total energy: -218678.0 ( -129.86 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1OMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OMI-query.scw
PDB file :
Tito_Scwrl_1OMI.pdb
: