Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSERSMKRLMKGAAWLTAASLISKILSAIYRVPFQNMVGDVGFYIFQQVYPIYGIAMTLALGGFPVVISKMLAEAEGDVRRQQIIMRAVSRMLRIVSIVIFAFLFLFANLIAIMMGDPALSELIRVISFVFLLMPQLAFMRGFFQGEGDMIPTAISQTVEQIIRVAIILIGAGLALHFNFDLYDAGSMAMSGAFFGGVSGIFILRHFYNKKVRLGEGIQPAVFTNKEEKVGIGRTFLRQSVAICVVSSMLILFQLVDSFQVYRLMSDSGIPDFIAKSLKGVYDRGQPILQLGLVISTGLALALVPMITAARVQGQQKELKRSVLLAIKITLILSGAETIGLIVIMRPLNQMLFQTPDGTFVLQLFMPAVFLSSLIIMLSSILQGFGKIAVPAVGVGIGLIVKWVTGGILIPRLATVGASVSTCVGLLVILLICYVSLKQTIRVPFVEKTMLFRLVAALVLMAVFPCLFEWLAPLDTRLGSAFQAIVSALVGGGIFLVFALRYKLLGPKDFVFLPFGSKLLALSKLVARK |
| 1W85 Chain:A ((100-222)) | ---------------------------------------------------------------------------------------------------------------------PGYRDVPQIIWHGLPLYQAFLFSRGHFHG--NQIPEGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGD--GGTSQ----GDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W85.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17125 for 843 contacts (-20.3/contact) +
2D Compatibility (PS) -11922 + (NN) -1648 + (LL) 39024
1D Compatibility (HY) -4800 + (ID) 1650
Total energy: 1879.0 ( 2.23 by residue)
QMean score : 0.018
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