Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVLNFFSYANLTPSDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTGLNLKVDNPREIGSDRIVNAVAASEEY-GTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEALYNRAAKLPRVDIAESSQIIGKSTVSSMQAGIFYGFVGQCEGIIAEMKKQS-NASPV-VVATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK
3DJC Chain:A ((3-251))
LILCIDVGNSHIYGGVFDGDEIKLRFRHTS-KVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVPQVDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCAISHKKAYLGGAILPGLRLSADALSKNTAKLPSVEIIKTESVVGRSTIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILILATGGFASLF-DKQGLYDHLVPDLVLQGIRL-----------
General information:
TITO was launched using:
RESULT:
Template:
3DJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205186 for 1952 contacts (-105.1/contact) +
2D Compatibility (PS) -26052 + (NN) -7766 + (LL) 560
1D Compatibility (HY) -26400 + (ID) 5150
Total energy: -269994.0 ( -138.32 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_3DJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJC-query.scw
PDB file :
Tito_Scwrl_3DJC.pdb
: