Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKKVIKEVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVVITVFEDRSFTFITKTPPAAVLLKKAAKVEKGSGEPNKTKVASVTRAQVQEIAETKMPDLNAANVESAMLMVEGTARSMGITIQD
2JQ7 Chain:A ((8-141))
-------QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
General information:
TITO was launched using:
RESULT:
Template:
2JQ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72943 for 910 contacts (-80.2/contact) +
2D Compatibility (PS) -15312 + (NN) -14598 + (LL) 924
1D Compatibility (HY) -15200 + (ID) 4700
Total energy: -121829.0 ( -133.88 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_2JQ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JQ7-query.scw
PDB file :
Tito_Scwrl_2JQ7.pdb
: