Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITDLRKQLRDA---GIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNE-DVVAPAKILNDFAKDHEA--LEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQKEGQEA
1ZAX Chain:A ((5-162))
-----QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGI---------
General information:
TITO was launched using:
RESULT:
Template:
1ZAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56511 for 1067 contacts (-53.0/contact) +
2D Compatibility (PS) -16425 + (NN) -4178 + (LL) 1164
1D Compatibility (HY) -13600 + (ID) 2750
Total energy: -92300.0 ( -86.50 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAX-query.scw
PDB file :
Tito_Scwrl_1ZAX.pdb
: