Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYVITTELPSAEEFVQLRVDAGLSFRAIEASRKALLKSVYFVGLRSKENGKLIGMGRLVGDGIMFIVSD------IAVFPSFQGKGFGKVIMTHIKDYIEANLDKTACVTLLADVPAH-----GLYKQFGFRESAPASIGMIYQVGN
2CNM Chain:A ((42-123))
-------------------------------------------------NLKLTADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETR----GVVTLWLEVRASNAAAIALYESLGFNEA-------------
General information:
TITO was launched using:
RESULT:
Template:
2CNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41532 for 387 contacts (-107.3/contact) +
2D Compatibility (PS) -7516 + (NN) -261 + (LL) 5424
1D Compatibility (HY) -6400 + (ID) 1400
Total energy: -51685.0 ( -133.55 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2CNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNM-query.scw
PDB file :
Tito_Scwrl_2CNM.pdb
: