Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTIKKYEPLNLYTNFKKSAERYPEMPIHFDEELVTFPELGLHSTYKKCEEAIIQKAAHLHKFGVRKEEKVIVYKSAKFDSYILAVAISYIGA---VPIMVSPH--LPASTIDIFVNR---LDQPWLLFDSETSDKSHQL---NNLPDSRLINAEQLFKAPLDGYTCEQEELP----KDMIAYMTHTSGTTGVPKLIAHSANSMGWRTKYQRRILNFIKPRGLVAFHISPVHSRFNIGVSSLMSLGFPLLPIA-NPSKANVEKVLREYKPYVLETHPNHFVQ--WA-----SLAREKPDVFQ-------SIKFYHSTFDAINKETMAVFLRTSEYK-------KPLFLQIYGQSECGPMILRGHTLQSIETLNARD---MGIGVPGLTEVRIVDQDGNPVPAGVSGNIQMLSKGRALTYYKEEARFEENVYGPWWDSGDYGMKDEKGRLFLQDRQVDLVETIDSTLAIEDKLLDTLTFLDEVVIIRGENGSPQPIIAVHNDGEMNWDAWWKAVSDLPHMNEPMVMKYDEIPRTATMKVQRLQMERELKK |
4R0M Chain:B ((62-436)) | ----------------------------------------------------------LEQKGIKLGHKVIL-QIAKNQDFIPALWACFLGGIIPVPLTVAPSYDLENSAVKKLENVWKILDNPLILSDSELITEIEKLGTYSHLEGWQVISVNELRKAP-----SKIEQLPILDPQDA-ALLLFTSGSTGMPKGVILTHHNILSMTAGTVVMNHFTQQE--VTLNWMPLDH-----VGAIVFLGIMAVDLACDQIHVPMELVLRQPLQW-LELIQKHQVSISWSPNFAFSLINQQAEELKHVSYNLSSMKFLVNAGEQVSVKTIRLFLEILEKHQLQERAIKPAF----GMTESCSGITWSAGLSKNELTEENSFVSLGKPIPGAT-IRIVDQENNPLPEREIGRLQIQGNSVTKGYYNNNELNQEVFQEGWFTTGDLGYLS-KGELFITGRE---------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4R0M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -98283 for 2571 contacts (-38.2/contact) +
2D Compatibility (PS) -35057 + (NN) -5027 + (LL) 13448
1D Compatibility (HY) -18800 + (ID) 5150
Total energy: -148869.0 ( -57.90 by residue)
QMean score : 0.430
|
|
|