Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKKLVAWFNGLSKMWKVVVIIGAVFVVIIALTTGEDEGEQTKTKKDSNKVVKTASRPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLDSQK
4CIH Chain:A ((1-146))
-------------------------------------------------------RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFDDVRTNKLQTALNNLKVGYELL----
General information:
TITO was launched using:
RESULT:
Template:
4CIH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20687 for 1033 contacts (-20.0/contact) +
2D Compatibility (PS) -15847 + (NN) -8823 + (LL) 4888
1D Compatibility (HY) -18800 + (ID) 7200
Total energy: -66469.0 ( -64.35 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_4CIH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CIH-query.scw
PDB file :
Tito_Scwrl_4CIH.pdb
: