Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMGFILICCLFVCASPFYVKANTDKATSKAGVIFT-HDPRKPKTGTDDRSGTFPTKVPPKRLPKTGDTADFYLVLLGVGFILIAKKGYFKEVREEIR
4LQ8 Chain:A ((244-318))
--------------------LKADGTKPSKDKAVYFTAHYEEGPNGKPQLKEISSPK---PLKFAGTGDDAIAYIEHGGEIYTLAVTRGKYKEMMKEV-
General information:
TITO was launched using:
RESULT:
Template:
4LQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15791 for 406 contacts (-38.9/contact) +
2D Compatibility (PS) -8022 + (NN) -4723 + (LL) 2140
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: -28646.0 ( -70.56 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_4LQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LQ8-query.scw
PDB file :
Tito_Scwrl_4LQ8.pdb
: