Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQD--KKVLILYGGGSVERFGTLDKVKAALKSR--EVGEFGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVIDGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFVEKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQDRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVP-QDWASHSLGHEITALYGIDHARTLAIVLPSLLNVRRSEKHDKLVQYAERVWGITSGSDEEKIDAAILKTREFFESLGAGTRFSDYGLGEEVVDLLVDQLDRHGLTNISERGDQTLEVSRQIYTNAL |
| 1VLJ Chain:A ((13-372)) | ----MENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAF---IG-KYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGS-SPEISNEIAEGTIRTIMKMTERLI-EKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGF-EGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNV--------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VLJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -200259 for 3230 contacts (-62.0/contact) +
2D Compatibility (PS) -37921 + (NN) -15336 + (LL) 2136
1D Compatibility (HY) -30800 + (ID) 7000
Total energy: -289180.0 ( -89.53 by residue)
QMean score : 0.566
|
|
|