Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLTKRIIPCLDVTAGR--VVKGVNFVSLTDVGDPVEIAKAYNEAGADELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISLNSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIRP
1H5Y Chain:A ((6-252))
----RIIPCLDIDGGAKVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEA-AAAGADAVLAASLFHFRVLSIAQVKRYLKERGVEVR-
General information:
TITO was launched using:
RESULT:
Template:
1H5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143144 for 2151 contacts (-66.5/contact) +
2D Compatibility (PS) -27019 + (NN) -11565 + (LL) 460
1D Compatibility (HY) -22800 + (ID) 6750
Total energy: -210818.0 ( -98.01 by residue)
QMean score : 0.682
(partial model without unconserved sides chains):
PDB file :
Tito_1H5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H5Y-query.scw
PDB file :
Tito_Scwrl_1H5Y.pdb
: