Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKISSDATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRA-TPLTKQLDGEYVYYVHSYYANCPEEYIIATSGY-SIEVPGMINKGNIYGAQFHPEKSGQIGLEILKGFKEVTYSCKSSQQ
1KA9 Chain:H ((6-190))
--LLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAG---RVPQMGWNALEFGGAFAPLT----GRHFYFANSYYGPL-TPYSLGKGEYEGTPFTALLAKENLLAPQFHPEKSGKAGLAFL---------------
General information:
TITO was launched using:
RESULT:
Template:
1KA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97542 for 1498 contacts (-65.1/contact) +
2D Compatibility (PS) -19636 + (NN) -3502 + (LL) 1456
1D Compatibility (HY) -16400 + (ID) 3450
Total energy: -139074.0 ( -92.84 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1KA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KA9-query.scw
PDB file :
Tito_Scwrl_1KA9.pdb
: