Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKKIISALSYFSLFFAPVITPAIIWCTTKDKEIRHHVKWALLTQATFVAGIVVMILLYNNVPFSTNSADTINFLALATVFFIVFLNVSILIFNLIRGITRIVKHSDDNWARC
3P8D Chain:A ((90-105))
--------------------------------------------------------------------------------------------------NEQVLACWSDCRFYPA
General information:
TITO was launched using:
RESULT:
Template:
3P8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2555 for 54 contacts (-47.3/contact) +
2D Compatibility (PS) -1915 + (NN) -2009 + (LL) 9856
1D Compatibility (HY) 400 + (ID) 100
Total energy: 3677.0 ( 68.09 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_3P8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P8D-query.scw
PDB file :
Tito_Scwrl_3P8D.pdb
: