Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDLFEADLPYYDVTMMSGLHKEAAGETLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNFSIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSLNYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVELAKIF
3P0R Chain:A ((5-211))
-TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYVASMMGFFGATNMETVVIEGHNQFPDKAEEIITAGLEEAAKVANKF
General information:
TITO was launched using:
RESULT:
Template:
3P0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127907 for 1639 contacts (-78.0/contact) +
2D Compatibility (PS) -22725 + (NN) -14314 + (LL) 208
1D Compatibility (HY) -21600 + (ID) 5700
Total energy: -192038.0 ( -117.17 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_3P0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P0R-query.scw
PDB file :
Tito_Scwrl_3P0R.pdb
: