Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTNMLDLFIEEASEHLQALNDNLLQLEKDPTNGQLVSEIFRSAHTFKGMSATMGFQQVADLTHAMENVLDEVRNNRLAVTEHLVDIIFTCTSHLETMVSDIQHGGQGAADISKTVADLEALLHPEQETDLTVEKTYRIAIQIEEAAILKAVRAVMCLERLAEMGIISETTPDREAIELEEFEQSFEVVLESAQTKDEIKAVILDISEIEKVTVTEEVEEVQVIEPIKKAAKQTTKRLENKTIRVQLEKIEKLMNVFEESVIERARIDEIAEKTNNKELMEHLGRFSSISKEIQNGLLNMRMVPVDSVFNRFPKMVRTLAKELGKKIDLVIEGADTEVDKIVIDEIGDPLVHLIRNSVDHGAETVEVRRKNGKNETATINLKAFHSGNNVVIEIADDGAGINKRKVLEKAIAKNVVTRAESTKMTDAEIFDLLFDSGFSTADQVSDLSGRGVGLDVVRNTILKIGGKISVESSENAGSTFRIEIPLTLSIIQSMLVATSERRYAVPLANVAEAITINPADIQHVHGKDLINYRETIIEVLDLGECFHETPLNDTDELLLLVVKNAKRTFGLIIKDIIGQREIVLKTLGGFFSESQIAFSGATILGDGRVVLILNLETF |
2CH4 Chain:A ((4-316)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIVIKSLGKVFSEVK-EFSGAAILGDGSIALIINV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CH4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194728 for 2324 contacts (-83.8/contact) +
2D Compatibility (PS) -33911 + (NN) -13126 + (LL) 28180
1D Compatibility (HY) -38000 + (ID) 6850
Total energy: -258435.0 ( -111.20 by residue)
QMean score : 0.458
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