Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPATGELVVGAT-KQAEQAFKNLAAVLEEAGSGLDKIIKATVFFKDLNEFKAVNEVYATFFSSDFPARSAFQVAKLPLDAEIEIEVIAEA
1NQ3 Chain:A ((4-127))
LVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIA--
General information:
TITO was launched using:
RESULT:
Template:
1NQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41226 for 915 contacts (-45.1/contact) +
2D Compatibility (PS) -13618 + (NN) -7529 + (LL) 248
1D Compatibility (HY) -13200 + (ID) 3100
Total energy: -78425.0 ( -85.71 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1NQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NQ3-query.scw
PDB file :
Tito_Scwrl_1NQ3.pdb
: