Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNN---NPDVIIRSLMSFVSGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK
2P4U Chain:A ((11-158))
---VLFVCLGNICRSPIAEAVFRKLVTDEKVSDNWAIDSSAVSDWNVGRPPDPRAVSCLRNHGIS-TAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSY-DPQKQLIIEDPYYGNDSD-FEVVYQQCLRCCKAFLEK-
General information:
TITO was launched using:
RESULT:
Template:
2P4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56814 for 1213 contacts (-46.8/contact) +
2D Compatibility (PS) -15735 + (NN) -8930 + (LL) 884
1D Compatibility (HY) -13200 + (ID) 3100
Total energy: -96895.0 ( -79.88 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_2P4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P4U-query.scw
PDB file :
Tito_Scwrl_2P4U.pdb
: