Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNCEKCNQNPATIQLYMNINGKRVEMPLCASCYAEVRNQANFGSNEFPGASGSPFDDIFRQLSGAANQANREQRSQANAQVQTQTAGGGNGILDEFGTNLTDMAKNEQLDPVIGRDKEIKRVIEILNRRNKNNPVLIGEPGVGKTAVVEGLANAIVAGDVPSKLMNKEVILLDVASLVSGTGIRGQFEERMKQLIKELQERKNTILFIDEVHTIVGAGSAEGSMDAGNILKPALARGDLQMIGATTLKEYRT-IEKDAALERRFQPVTVSEPSTKETLTILNGLKPKYEDFHEVVYSPEALTAAVELSARYIQDRHLPDKAIDLMDEVGSKYNLSIEKLDENT--VSERVARLEDEKNQALQMEDYEKAAKVRDEITRLEEN--KTSNSFSER-----PVIQASDIQAIIEEKTGIPVGRLQEDEQSKMKNLERNLTGKVIGQEDAVKKVAKAIRRSRVGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELFGTSEAMIRLDMSEFMEKHSISKLIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTVSFKDTVIIMTSNAGATDTEAS--VGFNTTTETKLEKG--SDILAKLGAYFKPEFLNRLDSVIEFKSLEKDDLVQIIDLMLVDLNEMLAQEGVTIDVSKEVKEHLIDLGYDPKFGARPLRRTIQEHLEDTIADSLIDQPEAKNLVATLNDNKEITITEQVTA |
3J3T Chain:A ((163-782)) | --------------------------------------------------------------------------------------------LDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDALHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWT-------AQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELL-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J3T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 258656 for 4909 contacts (52.7/contact) +
2D Compatibility (PS) -59831 + (NN) 16074 + (LL) 6300
1D Compatibility (HY) 23600 + (ID) 2350
Total energy: 242449.0 ( 49.39 by residue)
QMean score : -0.001
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