Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEPPSAQPVIVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVTKDVAPGTVVAGIPARELKKLDAKTASKTEIMQELRQL
3CJ8 Chain:A ((5-221))
----DAYEIIQYIGDAKKQTLVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEANKEKIEDYVVENDARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAVVGAGTMIDMGAVLGGRATVGKHCHIGAGTVLAGVIEPPSAAPVVIENEVVIGANAVVLEGVRVGEGAVVAAGAVVVEDVPAHTVVAGVPAKVIKQIDD---------------
General information:
TITO was launched using:
RESULT:
Template:
3CJ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -210539 for 1714 contacts (-122.8/contact) +
2D Compatibility (PS) -24550 + (NN) -12331 + (LL) 2300
1D Compatibility (HY) -27200 + (ID) 7250
Total energy: -279570.0 ( -163.11 by residue)
QMean score : 0.710
(partial model without unconserved sides chains):
PDB file :
Tito_3CJ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJ8-query.scw
PDB file :
Tito_Scwrl_3CJ8.pdb
: