Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTETRTEKKKKTTSTFTKVMKIASVALLGIIFFSITGLAAKYYITVQNTFSKINVPLESSNKTLSDLEKKKPFSVLLMGSDA--RAGEKNGRADTIILATANKQQNAVEMVSIPRDTKVD-YGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINMEGFKDLVDAVGGITVYNDI-DLTEVNSKFVKGNITLNGTEALQYVRIRHEDPRGDFGRQDRQRDVIIGIANKVISSSGVSNFESIMKAVGDNFQTNMTLTDITSMAANYSSVLKNVDSQELKGEGEMIYSESYGFDLYYFAPDKTDLERIITMFKKSLDITE |
3QFI Chain:A ((53-307)) | ---------------------------------------------------------------TANIDAQEPFSVLLMGIDTGD---------DTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLNHAYAFGGAEMAINTVQELLD-IPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFT--GITVPAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKIVRKVMSFD----YRKILDAVEANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQG-----YSATID-DIYYQVLDPNSLYKTQTTLRKQLGLKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QFI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73871 for 1814 contacts (-40.7/contact) +
2D Compatibility (PS) -25350 + (NN) -4976 + (LL) 6036
1D Compatibility (HY) -20400 + (ID) 4900
Total energy: -123461.0 ( -68.06 by residue)
QMean score : 0.406
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