Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINSYICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMNSIKREYPKVDANYYKGRDIYQCLLFCDESYDAYYREEFKQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI
2QYH Chain:A ((4-257))
--KIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPLRREKVRALTEEAHKNGHPLVFMDAEKMRASIGDHPHIHVSMASLKFAHPPVDPLYYENKDIYQALLFCRAEEEEPYVRNYPEFRFVRWHDVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVGTGVAMGNAHEEVKRVADFVTKPVDKEGIWYGLKQLQLI
General information:
TITO was launched using:
RESULT:
Template:
2QYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166633 for 2193 contacts (-76.0/contact) +
2D Compatibility (PS) -28173 + (NN) -18685 + (LL) 180
1D Compatibility (HY) -30000 + (ID) 6900
Total energy: -250211.0 ( -114.10 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_2QYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QYH-query.scw
PDB file :
Tito_Scwrl_2QYH.pdb
: