Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYSYPLNPDWTTEEMTIVVQFLEAIERAYEKGIDTLELKEKYRAFKQVVPAKGEEKRIGIDFEKASGYSAYKVMQLVKNATTSKIKMQP
1NIO Chain:A ((9-53))
--------------------------------GADSKSYSKFITALRKALPSKEKVSNIPLLLPSASGASRYILMQL-------------
General information:
TITO was launched using:
RESULT:
Template:
1NIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6760 for 175 contacts (38.6/contact) +
2D Compatibility (PS) -4951 + (NN) -2316 + (LL) 3928
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -79.0 ( -0.45 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1NIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NIO-query.scw
PDB file :
Tito_Scwrl_1NIO.pdb
: