Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNMDKETEAFFVQQIKDHFPDHCLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFAISLAVYEDGIGRLAYIYDVTRDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANLSVTRKFPTMWEAVKVSRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVEELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP
3QMF Chain:A ((15-260))
---QQIDKLICSWLKQIDNVIPQLIME-MTTETKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLAE--------NEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEE-PPSLKLEDAIISFNAQVMN-LDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVL-----
General information:
TITO was launched using:
RESULT:
Template:
3QMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134001 for 1942 contacts (-69.0/contact) +
2D Compatibility (PS) -25976 + (NN) -12163 + (LL) 792
1D Compatibility (HY) -16800 + (ID) 4350
Total energy: -192498.0 ( -99.12 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_3QMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QMF-query.scw
PDB file :
Tito_Scwrl_3QMF.pdb
: