Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILVTGANGQLGTELVQLLKEHNLTVTEWDKDSVDIVDKAAVKKAMLDLKPEWIIHCAAFTNVEAAEDELKNVNWEVNVDGTENISEAAEIVGAKLVYISTDYVFDGTKKEAYLPDDKTNPLNQYGIAKLAGEKVALEKNSQTYVIRTSWVFGKYGNNFVYSMLKLAETHKELKVVNDQLGRPTYTYDLADFIRFVI-EKNPAYGIYQFSNSGTATWFEFATEI--LKDKDVTVNPCTSDEFPQKAERPKTSIMSLEKVEKLGFNIPTWQDALVRFKK
1VL0 Chain:A ((15-263))
--ILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQY-DLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAWLYGD-GNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKN--YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVL------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VL0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108531 for 2093 contacts (-51.9/contact) +
2D Compatibility (PS) -26869 + (NN) -11754 + (LL) 2260
1D Compatibility (HY) -20000 + (ID) 5800
Total energy: -170694.0 ( -81.55 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1VL0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL0-query.scw
PDB file :
Tito_Scwrl_1VL0.pdb
: