Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELKHVIPNMEKTFGQLEFAGEGKVEQRRINGKPT-ILSRSYNLYSNIQRADD--IVVILPAEAGEKHFEIEQKVKLV------NPRITAEGYKIGTRGFTNYVMYADDIVKV
1OGM Chain:X ((123-198))
-------------------------------GSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFA------
General information:
TITO was launched using:
RESULT:
Template:
1OGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3016 for 322 contacts (-9.4/contact) +
2D Compatibility (PS) -7286 + (NN) -1867 + (LL) 2900
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -15919.0 ( -49.44 by residue)
QMean score : 0.170
(partial model without unconserved sides chains):
PDB file :
Tito_1OGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OGM-query.scw
PDB file :
Tito_Scwrl_1OGM.pdb
: