Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD
1SD5 Chain:A ((15-196))
------RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAP-IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVL----
General information:
TITO was launched using:
RESULT:
Template:
1SD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66520 for 1477 contacts (-45.0/contact) +
2D Compatibility (PS) -19804 + (NN) -9960 + (LL) -116
1D Compatibility (HY) -17200 + (ID) 4000
Total energy: -117600.0 ( -79.62 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1SD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD5-query.scw
PDB file :
Tito_Scwrl_1SD5.pdb
: