Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKE--LIKDKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEK------------------SNPDLEVKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMQGIDYELVDMTTVVIVGNKETYVKNGKMITPRGYSL
2ZVC Chain:A ((4-260))
-LFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLLTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEVALTTLEGLREAEAGMLTTVVIGNRQSRFYEGTFLTPRG---
General information:
TITO was launched using:
RESULT:
Template:
2ZVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207664 for 2000 contacts (-103.8/contact) +
2D Compatibility (PS) -26948 + (NN) -18694 + (LL) 448
1D Compatibility (HY) -20000 + (ID) 5400
Total energy: -278258.0 ( -139.13 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_2ZVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZVC-query.scw
PDB file :
Tito_Scwrl_2ZVC.pdb
: