Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQEAKVFISILGTDKEK--ENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDELLRDLNNDQ
1JOS Chain:A ((7-106))
---RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGM-------------
General information:
TITO was launched using:
RESULT:
Template:
1JOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49793 for 651 contacts (-76.5/contact) +
2D Compatibility (PS) -10646 + (NN) -6556 + (LL) 1056
1D Compatibility (HY) -11200 + (ID) 2150
Total energy: -79289.0 ( -121.80 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_1JOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOS-query.scw
PDB file :
Tito_Scwrl_1JOS.pdb
: