Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKKNLRMLALGFLISAVVLLVYNQFFSTQTKADETKATSTKAGSDENSSTWKNKYEKLLAQQEVDKATEAEAKKKAEEDAKKKAEEAKKVKSYTLKISKGDPSSKAG----DELQANGIIKSASDFDKYLRDNDYEKYIRDGSYNLKSDMSYETIAKILTHKN |
1PPM Chain:E ((43-95)) | ------------------------------------------------------------------STELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGV-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16915 for 187 contacts (90.5/contact) +
2D Compatibility (PS) -4741 + (NN) 1816 + (LL) 7568
1D Compatibility (HY) -2400 + (ID) 750
Total energy: 18408.0 ( 98.44 by residue)
QMean score : 0.508
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