Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKKNIILISVLLGALLLLTGCSMDP-SQNTDGFFSTYLIQPFTSFIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQARLKRATSKEE--QATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIASHTFLWFNLGSPDMVLAIIAGLVYLAQYFVSMIGYSPEQKK--QMKIIGLMSPIMILFVSFTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK
3WO6 Chain:A ((3-231))
------------------------DPITSESEGIWNHFFVYPMSWLITTVANLLNGSYGLSIIIVTILIRLALLPLTLKQQKSMRAMQ----VIRPEMEAIQKKYKEKASKDPKVQQEMQKELLGLYQKHGVNPMA-GCLPLFIQLPILMAFYFAIMRTEEIRYHTFLWFDLGQPDYILPFVAGITTYFQFKMTMSH-------QMQMKVMLYVMPVMIIIAGLSLPSALSLYWVIGNIFMIIQT-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164731 for 1377 contacts (-119.6/contact) +
2D Compatibility (PS) -22258 + (NN) -11629 + (LL) 6900
1D Compatibility (HY) -29200 + (ID) 4500
Total energy: -225418.0 ( -163.70 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_3WO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WO6-query.scw
PDB file :
Tito_Scwrl_3WO6.pdb
: