Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEHIDVRKGNGLAVIEKKDVIDTIVIAGMGGALIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKIYEIMVLAPSKKPVAWTKQEIFFGPCLLKDQSAIFKSKWRHEANTWQNIIQTISNNQPVSPENQAKIRE-LEHKIALVEDVLK
3KR9 Chain:A ((2-221))
-----ISKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQMKLSAS--DVRFGPFLSKEVSPVFVQKWQKEAEKLEFALGQI-------PEKNLEERQVLVDKIQAIKEVL-
General information:
TITO was launched using:
RESULT:
Template:
3KR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121939 for 1764 contacts (-69.1/contact) +
2D Compatibility (PS) -23374 + (NN) -677 + (LL) 660
1D Compatibility (HY) -19200 + (ID) 5050
Total energy: -169580.0 ( -96.13 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3KR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KR9-query.scw
PDB file :
Tito_Scwrl_3KR9.pdb
: