Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTLLDKLNEDMKQAMRDKEKEKLSVIRMLKAALQNEAIHQGVKDLTPDDEVTVISRELKQRRDSLAEFDKAGRSDLSDKVRSEIVIVEDYAPKQLTPEELENIVKATIEEVGASSKADFGKVMSAIMPKVKGKADGGAVNQFVKKYLS
1LNS Chain:A ((453-485))
----------------------------------------------------------------------------TDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LNS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2522 for 138 contacts (-18.3/contact) +
2D Compatibility (PS) -3635 + (NN) -3606 + (LL) 8240
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -4923.0 ( -35.67 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1LNS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LNS-query.scw
PDB file :
Tito_Scwrl_1LNS.pdb
: