Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKTVVRKNESLEDALRRFKRTVSKSGTLQESRKREFYEKPSVKRKKKSEAARKRKF
2YKR Chain:U ((5-53))
-----VRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVK---
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16285 for 185 contacts (88.0/contact) +
2D Compatibility (PS) -4749 + (NN) 1382 + (LL) 784
1D Compatibility (HY) -2800 + (ID) 1350
Total energy: 9552.0 ( 51.63 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: