Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERNEVLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKARITALLHDYAKYYDDDKARKIIEDEGYDPRLLSFHHSLWHAPVGAYLAEKEFGITDTEILEAIRLHTTGSATMSDFDKLIYLADYTEQGRTFPGVYKARRLALKSLDEAMLFALSNTITHLVKKQQLVFPDTLDAYNYFVNLNLEGDY
2O08 Chain:A ((4-184))
--RGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNMSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLL--------
General information:
TITO was launched using:
RESULT:
Template:
2O08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87939 for 1463 contacts (-60.1/contact) +
2D Compatibility (PS) -19469 + (NN) -10819 + (LL) 452
1D Compatibility (HY) -16400 + (ID) 3900
Total energy: -138075.0 ( -94.38 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_2O08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O08-query.scw
PDB file :
Tito_Scwrl_2O08.pdb
: