Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNTKGKKITIIISIIILILVIATFSGYYYVKSQLEPKDEASKEKITVEIPAGSSISDISTILEDKKVINNASIFSFYVKYNNDTNLKAGNYELSPAMNTDQIVKKMQEGKTVA-PAKLVIPEGYTLDQIADRIVAYQPKLKKADVLK-TMDDPEFVASMIKAYPETVTNDVLNKSIKHP--LEGYLYPAT--YTFKGTDVSA-EQIITEMVKATDVNIAKYRDELTKQKMSVHKFLTMSSIIEKEATENVDRKMIASVFYNRLAKDMRLQTDPTVLYALGE-HKSKTTYKDLEVDSPYNTYKNNGLPPGPISNSGDSSMEAALYPEKSDYLYFLANTKTGKVYFSKTLEEHNKLKEEHITKNN |
| 2R1F Chain:A ((11-261)) | -------------------------------------------------------------------------------------HFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLV--EG-------MRLSDYLKQLREAPYIKHTLSDDKY-ATVAQAL-----------ELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKN--QLVTMASIIEKETAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHT-FNTNLASHNKSVQDYL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2R1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23341 for 1768 contacts (-13.2/contact) +
2D Compatibility (PS) -26040 + (NN) -10793 + (LL) 8152
1D Compatibility (HY) -16800 + (ID) 5000
Total energy: -73822.0 ( -41.75 by residue)
QMean score : 0.451
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