Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKVLTFENISYWYKTKDESI--LNDINYDFEAGVFYTVVGSSGSGKTTFLSLAGGLDTQKEGDIYY---KGSSLKSIGLQQFRNKYVSIVFQSYNLLTYMTALQNVTTAMEITH---VNQPDKKAFALSMLEKVGITEEMARQKVLTLSGGQQQRVSIARALCCETELIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEIAKVSDVKLTLKNGSFVEKKQSMNSLINS
1F3O Chain:A ((2-229))
----IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE-VEREEKL------
General information:
TITO was launched using:
RESULT:
Template:
1F3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116479 for 1780 contacts (-65.4/contact) +
2D Compatibility (PS) -24190 + (NN) -7295 + (LL) 812
1D Compatibility (HY) -20800 + (ID) 4100
Total energy: -172052.0 ( -96.66 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1F3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3O-query.scw
PDB file :
Tito_Scwrl_1F3O.pdb
: