Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRLE-GTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADV------VASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEADLTSDAYIKLALQLMTK
1C7Y Chain:A ((5-200))
----LRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTS----ATDDAE---QEAVAALVALGYKPQEASRMVSKIAR-PDASSETLIREALR----
General information:
TITO was launched using:
RESULT:
Template:
1C7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123225 for 1417 contacts (-87.0/contact) +
2D Compatibility (PS) -19832 + (NN) -5844 + (LL) 852
1D Compatibility (HY) -11600 + (ID) 3250
Total energy: -162899.0 ( -114.96 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1C7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C7Y-query.scw
PDB file :
Tito_Scwrl_1C7Y.pdb
: